HL_9YDE_047
3D structure
- PDB id
- 9YDE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 9YDE|1|A|G|2618
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDE_047 not in the Motif Atlas
- Homologous match to HL_9AXU_050
- Geometric discrepancy: 0.0895
- The information below is about HL_9AXU_050
- Detailed Annotation
- LSU P loop
- Broad Annotation
- LSU P loop
- Motif group
- HL_11974.5
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 21
Unit IDs
9YDE|1|A|C|2616
9YDE|1|A|U|2617
9YDE|1|A|G|2618
9YDE|1|A|G|2619
9YDE|1|A|G|2620
9YDE|1|A|G|2621
9YDE|1|A|C|2622
9YDE|1|A|G|2623
9YDE|1|A|G|2624
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LL
- Large ribosomal subunit protein uL16
- Chain Ld
- 60S ribosomal protein L29
- Chain n
- Transfer RNA; tRNA
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