HL_9YDE_051
3D structure
- PDB id
- 9YDE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- UUCAGUGUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDE_051 not in the Motif Atlas
- Homologous match to HL_9PN5_056
- Geometric discrepancy: 0.0928
- The information below is about HL_9PN5_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_15296.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9YDE|1|A|U|2724
9YDE|1|A|U|2725
9YDE|1|A|C|2726
9YDE|1|A|A|2727
9YDE|1|A|G|2728
9YDE|1|A|U|2729
9YDE|1|A|G|2730
9YDE|1|A|U|2731
9YDE|1|A|G|2732
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LS
- 60S ribosomal protein L18-A
- Chain LV
- 60S ribosomal protein L21-A
- Chain Lc
- 60S ribosomal protein L28
- Chain Ld
- 60S ribosomal protein L29
- Chain Lq
- 60S ribosomal protein L42-A
Coloring options: