HL_9YDE_087

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDE_087 not in the Motif Atlas

Homologous match to HL_9SUM_090

Geometric discrepancy: 0.0912

The information below is about HL_9SUM_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9YDE|1|E|A|1084
9YDE|1|E|G|1085
9YDE|1|E|A|1086
9YDE|1|E|A|1087
9YDE|1|E|A|1088
9YDE|1|E|U|1089

Current chains

Chain E

18S rRNA

Nearby chains

Chain SR

40S ribosomal protein S2

Chain Sb

40S ribosomal protein S22-A

Chain Se

Small ribosomal subunit protein eS26B