HL_9YPG_006

3D structure

PDB id

9YPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUCGAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YPG_006 not in the Motif Atlas

Homologous match to HL_8JOZ_004

Geometric discrepancy: 0.1921

The information below is about HL_8JOZ_004

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

9YPG|1|12|G|53
9YPG|1|12|U|54
9YPG|1|12|U|55
9YPG|1|12|C|56
9YPG|1|12|G|57
9YPG|1|12|A|58
9YPG|1|12|U|59
9YPG|1|12|C|60
9YPG|1|12|C|61

Current chains

Chain 12

Phe-tRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain jj

GTP-binding protein 1