HL_9YPG_024
3D structure
- PDB id
- 9YPG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UCUUGAAACA
- Length
- 10 nucleotides
- Bulged bases
- 9YPG|1|5|C|1325
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YPG_024 not in the Motif Atlas
- Homologous match to HL_8GLP_119
- Geometric discrepancy: 0.0508
- The information below is about HL_8GLP_119
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 142
Unit IDs
9YPG|1|5|U|1317
9YPG|1|5|C|1318
9YPG|1|5|U|1319
9YPG|1|5|U|1320
9YPG|1|5|G|1321
9YPG|1|5|A|1322
9YPG|1|5|A|1323
9YPG|1|5|A|1324
9YPG|1|5|C|1325
9YPG|1|5|A|1326
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain B
- Ribosomal protein L3
- Chain a
- 60S ribosomal protein L27a
- Chain e
- Ribosomal protein L32
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