HL_9YPG_031

3D structure

PDB id

9YPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

9YPG|1|5|A|1630, 9YPG|1|5|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YPG_031 not in the Motif Atlas

Homologous match to HL_8GLP_024

Geometric discrepancy: 0.0539

The information below is about HL_8GLP_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28253.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9YPG|1|5|G|1627
9YPG|1|5|C|1628
9YPG|1|5|G|1629
9YPG|1|5|A|1630
9YPG|1|5|A|1631
9YPG|1|5|A|1632
9YPG|1|5|G|1633
9YPG|1|5|A|1634
9YPG|1|5|C|1635

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain N

Ribosomal protein L15

Chain j

Ribosomal protein L37