HL_9YPG_065
3D structure
- PDB id
- 9YPG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GACAGAAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YPG_065 not in the Motif Atlas
- Homologous match to HL_8GLP_061
- Geometric discrepancy: 0.1002
- The information below is about HL_8GLP_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02452.4
- Basepair signature
- cWW-F-cWH-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
9YPG|1|5|G|4250
9YPG|1|5|A|4251
9YPG|1|5|C|4252
9YPG|1|5|A|4253
9YPG|1|5|G|4254
9YPG|1|5|A|4255
9YPG|1|5|A|4256
9YPG|1|5|A|4257
9YPG|1|5|C|4258
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain J
- Ribosomal protein L11
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