HL_9YPG_095

3D structure

PDB id

9YPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

9YPG|1|9|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YPG_095 not in the Motif Atlas

Homologous match to HL_9PN5_087

Geometric discrepancy: 0.1042

The information below is about HL_9PN5_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.7

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

9YPG|1|9|C|462
9YPG|1|9|C|463
9YPG|1|9|A|464
9YPG|1|9|A|465
9YPG|1|9|G|466
9YPG|1|9|G|467

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain GG

40S ribosomal protein S6

Chain V

Ribosomal protein L23

Chain W

eL24

Chain jj

GTP-binding protein 1