HL_9YPG_102
3D structure
- PDB id
- 9YPG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YPG_102 not in the Motif Atlas
- Homologous match to HL_9H3G_093
- Geometric discrepancy: 0.0661
- The information below is about HL_9H3G_093
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
9YPG|1|9|A|957
9YPG|1|9|G|958
9YPG|1|9|G|959
9YPG|1|9|U|960
9YPG|1|9|G|961
9YPG|1|9|A|962
9YPG|1|9|A|963
9YPG|1|9|A|964
9YPG|1|9|U|965
9YPG|1|9|U|966
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain 10
- MF mRNA
- Chain 11
- Transfer RNA; tRNA
- Chain OO
- Small ribosomal subunit protein uS11
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