HL_9YPO_001

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGCGGAAG

Length

9 nucleotides

Bulged bases

9YPO|1|11|G|18, 9YPO|1|11|G|19, 9YPO|1|11|A|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YPO_001 not in the Motif Atlas

Homologous match to HL_7YSE_001

Geometric discrepancy: 0.2523

The information below is about HL_7YSE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|11|C|14
9YPO|1|11|A|15
9YPO|1|11|G|16
9YPO|1|11|C|17
9YPO|1|11|G|18
9YPO|1|11|G|19
9YPO|1|11|A|20
9YPO|1|11|A|21
9YPO|1|11|G|22

Current chains

Chain 11

Met-tRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA