HL_9YPO_038

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

9YPO|1|5|A|1984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|5|C|1978
9YPO|1|5|A|1979
9YPO|1|5|U|1980
9YPO|1|5|G|1981
9YPO|1|5|G|1982
9YPO|1|5|A|1983
9YPO|1|5|A|1984
9YPO|1|5|G|1985
9YPO|1|5|U|1986
9YPO|1|5|C|1987
9YPO|1|5|G|1988

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 12

Transfer RNA; tRNA

Chain I

60S ribosomal protein L10