HL_9AXU_025

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

9AXU|1|2|U|1272, 9AXU|1|2|G|1273, 9AXU|1|2|G|1274, 9AXU|1|2|A|1276

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AXU_025 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.3446

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9AXU|1|2|C|1270
9AXU|1|2|A|1271
9AXU|1|2|U|1272
9AXU|1|2|G|1273
9AXU|1|2|G|1274
9AXU|1|2|A|1275
9AXU|1|2|A|1276
9AXU|1|2|G|1277
9AXU|1|2|U|1278
9AXU|1|2|C|1279
9AXU|1|2|G|1280

Current chains

Chain 2

28S ribosomal RNA

Nearby chains