HL_9YPO_061

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

9YPO|1|5|A|3760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|5|G|3757
9YPO|1|5|U|3758
9YPO|1|5|A|3759
9YPO|1|5|A|3760
9YPO|1|5|C|3761
9YPO|1|5|U|3762
9YPO|1|5|A|3763
9YPO|1|5|U|3764
9YPO|1|5|G|3765
9YPO|1|5|A|3766
9YPO|1|5|C|3767

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 10

MF mRNA

Chain 12

Transfer RNA; tRNA

Chain 13

Transfer RNA; tRNA

Chain 9

Small subunit ribosomal RNA; SSU rRNA