HL_9YPO_064
3D structure
- PDB id
- 9YPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 9YPO|1|5|G|4195
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YPO_064 not in the Motif Atlas
- Homologous match to HL_8GLP_059
- Geometric discrepancy: 0.0514
- The information below is about HL_8GLP_059
- Detailed Annotation
- LSU P loop
- Broad Annotation
- LSU P loop
- Motif group
- HL_11974.5
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 21
Unit IDs
9YPO|1|5|C|4193
9YPO|1|5|U|4194
9YPO|1|5|G|4195
9YPO|1|5|G|4196
9YPO|1|5|G|4197
9YPO|1|5|G|4198
9YPO|1|5|C|4199
9YPO|1|5|G|4200
9YPO|1|5|G|4201
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 13
- Transfer RNA; tRNA
- Chain I
- 60S ribosomal protein L10
- Chain b
- Large ribosomal subunit protein eL29
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