HL_9YPO_115

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

9YPO|1|9|U|1621, 9YPO|1|9|U|1622, 9YPO|1|9|A|1623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|9|A|1614
9YPO|1|9|U|1615
9YPO|1|9|U|1616
9YPO|1|9|G|1617
9YPO|1|9|C|1618
9YPO|1|9|A|1619
9YPO|1|9|A|1620
9YPO|1|9|U|1621
9YPO|1|9|U|1622
9YPO|1|9|A|1623
9YPO|1|9|U|1624
9YPO|1|9|U|1625

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain PP

uS19

Chain SS

uS13

Chain TT

eS19

Chain dd

eS29