HL_9YPS_032

3D structure

PDB id

9YPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

9YPS|1|5|C|1676, 9YPS|1|5|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YPS_032 not in the Motif Atlas

Homologous match to HL_9H3G_028

Geometric discrepancy: 0.1175

The information below is about HL_9H3G_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.3

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

9YPS|1|5|C|1675
9YPS|1|5|C|1676
9YPS|1|5|U|1677
9YPS|1|5|C|1678
9YPS|1|5|A|1679
9YPS|1|5|G|1680

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain a

60S ribosomal protein L27a

Chain b

Large ribosomal subunit protein eL29

Chain o

Large ribosomal subunit protein eL42