HL_9YPS_037

3D structure

PDB id

9YPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

9YPS|1|5|A|1984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPS|1|5|C|1978
9YPS|1|5|A|1979
9YPS|1|5|U|1980
9YPS|1|5|G|1981
9YPS|1|5|G|1982
9YPS|1|5|A|1983
9YPS|1|5|A|1984
9YPS|1|5|G|1985
9YPS|1|5|U|1986
9YPS|1|5|C|1987
9YPS|1|5|G|1988

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 12

Transfer RNA; tRNA

Chain I

60S ribosomal protein L10