HL_9YPT_013

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

9YPT|1|5|G|134, 9YPT|1|5|G|135, 9YPT|1|5|C|136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YPT_013 not in the Motif Atlas

Geometric match to HL_6D12_001

Geometric discrepancy: 0.1406

The information below is about HL_6D12_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.5

Basepair signature

cWW-F-F

Number of instances in this motif group

21

Unit IDs

9YPT|1|5|C|131
9YPT|1|5|G|132
9YPT|1|5|C|133
9YPT|1|5|G|134
9YPT|1|5|G|135
9YPT|1|5|C|136
9YPT|1|5|G|137

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain N

Ribosomal protein L15

Chain h

eL35

Chain j

Ribosomal protein L37