HL_9YPT_071

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9YPT|1|5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YPT_071 not in the Motif Atlas

Homologous match to HL_8GLP_067

Geometric discrepancy: 0.0839

The information below is about HL_8GLP_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

9YPT|1|5|A|4474
9YPT|1|5|G|4475
9YPT|1|5|C|4476
9YPT|1|5|A|4477
9YPT|1|5|G|4478
9YPT|1|5|A|4479
9YPT|1|5|A|4480
9YPT|1|5|U|4481

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain m

Ubiquitin-ribosomal protein eL40 fusion protein