HL_9YPT_082

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUCUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YPT_082 not in the Motif Atlas

Homologous match to HL_4V9F_071

Geometric discrepancy: 0.2083

The information below is about HL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59381.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9YPT|1|7|C|36
9YPT|1|7|G|37
9YPT|1|7|U|38
9YPT|1|7|C|39
9YPT|1|7|U|40
9YPT|1|7|G|41

Current chains

Chain 7

5S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain D

Large ribosomal subunit protein uL18

Chain J

Ribosomal protein L11