HL_9YPT_115

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCAUAAGC

Length

9 nucleotides

Bulged bases

9YPT|1|9|C|1660, 9YPT|1|9|G|1665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPT|1|9|G|1658
9YPT|1|9|U|1659
9YPT|1|9|C|1660
9YPT|1|9|A|1661
9YPT|1|9|U|1662
9YPT|1|9|A|1663
9YPT|1|9|A|1664
9YPT|1|9|G|1665
9YPT|1|9|C|1666

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain QQ

uS9

Chain TT

eS19

Chain UU

uS10

Chain dd

eS29