HL_9YPV_002
3D structure
- PDB id
- 9YPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCCCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YPV_002 not in the Motif Atlas
- Homologous match to HL_9J4O_001
- Geometric discrepancy: 0.1379
- The information below is about HL_9J4O_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
9YPV|1|11|G|31
9YPV|1|11|C|32
9YPV|1|11|C|33
9YPV|1|11|C|34
9YPV|1|11|A|35
9YPV|1|11|U|36
9YPV|1|11|A|37
9YPV|1|11|A|38
9YPV|1|11|C|39
Current chains
- Chain 11
- Met-tRNA
Nearby chains
- Chain 10
- MF mRNA
- Chain 13
- Transfer RNA; tRNA
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain FF
- Ribosomal protein S5
- Chain OO
- Small ribosomal subunit protein uS11
- Chain cc
- Ribosomal protein S28
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