HL_9YPV_017

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

9YPV|1|5|G|294, 9YPV|1|5|A|295, 9YPV|1|5|A|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPV|1|5|C|289
9YPV|1|5|U|290
9YPV|1|5|U|291
9YPV|1|5|G|292
9YPV|1|5|G|293
9YPV|1|5|G|294
9YPV|1|5|A|295
9YPV|1|5|A|296
9YPV|1|5|U|297
9YPV|1|5|G|298

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L13

Chain N

Ribosomal protein L15

Chain a

60S ribosomal protein L27a

Chain o

Large ribosomal subunit protein eL42