HL_9YPV_066

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YPV_066 not in the Motif Atlas

Homologous match to HL_8GLP_061

Geometric discrepancy: 0.112

The information below is about HL_8GLP_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.4

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9YPV|1|5|G|4250
9YPV|1|5|A|4251
9YPV|1|5|C|4252
9YPV|1|5|A|4253
9YPV|1|5|G|4254
9YPV|1|5|A|4255
9YPV|1|5|A|4256
9YPV|1|5|A|4257
9YPV|1|5|C|4258

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain J

Ribosomal protein L11