HL_9YPV_099
3D structure
- PDB id
- 9YPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- ACUUUAAAUCCUU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YPV_099 not in the Motif Atlas
- Homologous match to HL_9PN5_090
- Geometric discrepancy: 0.1568
- The information below is about HL_9PN5_090
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68749.3
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9YPV|1|9|A|569
9YPV|1|9|C|570
9YPV|1|9|U|571
9YPV|1|9|U|572
9YPV|1|9|U|573
9YPV|1|9|A|574
9YPV|1|9|A|575
9YPV|1|9|A|576
9YPV|1|9|U|577
9YPV|1|9|C|578
9YPV|1|9|C|579
9YPV|1|9|U|580
9YPV|1|9|U|581
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain JJ
- Ribosomal protein S9 (Predicted)
- Chain YY
- 40S ribosomal protein S24
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