HL_9YPV_105
3D structure
- PDB id
- 9YPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 9YPV|1|9|U|1061
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPV|1|9|G|1054
9YPV|1|9|A|1055
9YPV|1|9|U|1056
9YPV|1|9|C|1057
9YPV|1|9|A|1058
9YPV|1|9|G|1059
9YPV|1|9|A|1060
9YPV|1|9|U|1061
9YPV|1|9|A|1062
9YPV|1|9|C|1063
9YPV|1|9|C|1064
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain 10
- MF mRNA
- Chain 11
- Transfer RNA; tRNA
- Chain 13
- Transfer RNA; tRNA
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain OO
- Small ribosomal subunit protein uS11
- Chain aa
- 40S ribosomal protein S26
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