HL_9YPV_115
3D structure
- PDB id
- 9YPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AUUGCAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 9YPV|1|9|U|1621, 9YPV|1|9|U|1622, 9YPV|1|9|A|1623
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YPV_115 not in the Motif Atlas
- Homologous match to HL_9PN5_108
- Geometric discrepancy: 0.1856
- The information below is about HL_9PN5_108
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50951.3
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9YPV|1|9|A|1614
9YPV|1|9|U|1615
9YPV|1|9|U|1616
9YPV|1|9|G|1617
9YPV|1|9|C|1618
9YPV|1|9|A|1619
9YPV|1|9|A|1620
9YPV|1|9|U|1621
9YPV|1|9|U|1622
9YPV|1|9|A|1623
9YPV|1|9|U|1624
9YPV|1|9|U|1625
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain PP
- uS19
- Chain SS
- uS13
- Chain TT
- eS19
- Chain dd
- eS29
Coloring options: