HL_9YPW_048
3D structure
- PDB id
- 9YPW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUUCUCUUU
- Length
- 9 nucleotides
- Bulged bases
- 9YPW|1|5|U|2631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YPW_048 not in the Motif Atlas
- Homologous match to HL_9PN5_036
- Geometric discrepancy: 0.1746
- The information below is about HL_9PN5_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_22758.3
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9YPW|1|5|G|2624
9YPW|1|5|U|2625
9YPW|1|5|U|2626
9YPW|1|5|C|2627
9YPW|1|5|U|2628
9YPW|1|5|C|2629
9YPW|1|5|U|2630
9YPW|1|5|U|2631
9YPW|1|5|U|2632
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain R
- Ribosomal protein L19
- Chain U
- eL22
Coloring options: