HL_9YPW_111

3D structure

PDB id

9YPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

9YPW|1|9|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YPW_111 not in the Motif Atlas

Homologous match to HL_9H3G_102

Geometric discrepancy: 0.0805

The information below is about HL_9H3G_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.4

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

9YPW|1|9|G|1366
9YPW|1|9|U|1367
9YPW|1|9|U|1368
9YPW|1|9|A|1369
9YPW|1|9|A|1370
9YPW|1|9|U|1371
9YPW|1|9|U|1372
9YPW|1|9|C|1373

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain RR

eS17