HL_9YPY_062

3D structure

PDB id

9YPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome with accommodated A-site tRNA, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9YPY|1|5|A|3876, 9YPY|1|5|A|3877, 9YPY|1|5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YPY_062 not in the Motif Atlas

Homologous match to HL_8GLP_055

Geometric discrepancy: 0.0619

The information below is about HL_8GLP_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

12

Unit IDs

9YPY|1|5|G|3873
9YPY|1|5|G|3874
9YPY|1|5|G|3875
9YPY|1|5|A|3876
9YPY|1|5|A|3877
9YPY|1|5|C|3878
9YPY|1|5|G|3879
9YPY|1|5|G|3880
9YPY|1|5|G|3881
9YPY|1|5|C|3882

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein L3

Chain e

Ribosomal protein L32