HL_9YPZ_093

3D structure

PDB id

9YPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 1, Structure Ia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

9YPZ|1|9|A|500, 9YPZ|1|9|C|502, 9YPZ|1|9|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YPZ_093 not in the Motif Atlas

Homologous match to HL_9PN5_088

Geometric discrepancy: 0.1901

The information below is about HL_9PN5_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25795.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9YPZ|1|9|C|498
9YPZ|1|9|G|499
9YPZ|1|9|A|500
9YPZ|1|9|C|501
9YPZ|1|9|C|502
9YPZ|1|9|C|503
9YPZ|1|9|G|504

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4 (S4 X isoform)

Chain YY

40S ribosomal protein S24