HL_9YQ0_029

3D structure

PDB id

9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 2, Structure Ib

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

9YQ0|1|5|C|1676, 9YQ0|1|5|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YQ0_029 not in the Motif Atlas

Homologous match to HL_9H3G_028

Geometric discrepancy: 0.1196

The information below is about HL_9H3G_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.3

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

9YQ0|1|5|C|1675
9YQ0|1|5|C|1676
9YQ0|1|5|U|1677
9YQ0|1|5|C|1678
9YQ0|1|5|A|1679
9YQ0|1|5|G|1680

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain a

60S ribosomal protein L27a

Chain b

Large ribosomal subunit protein eL29

Chain o

Large ribosomal subunit protein eL42