HL_9YQ0_078
3D structure
- PDB id
- 9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 2, Structure Ib
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUCUCGUCUGAUCU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YQ0_078 not in the Motif Atlas
- Geometric match to HL_8QYX_071
- Geometric discrepancy: 0.0513
- The information below is about HL_8QYX_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01182.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
9YQ0|1|7|A|32
9YQ0|1|7|U|33
9YQ0|1|7|C|34
9YQ0|1|7|U|35
9YQ0|1|7|C|36
9YQ0|1|7|G|37
9YQ0|1|7|U|38
9YQ0|1|7|C|39
9YQ0|1|7|U|40
9YQ0|1|7|G|41
9YQ0|1|7|A|42
9YQ0|1|7|U|43
9YQ0|1|7|C|44
9YQ0|1|7|U|45
Current chains
- Chain 7
- 5S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- Large ribosomal subunit protein uL18
- Chain J
- Ribosomal protein L11
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