HL_9YQ0_108

3D structure

PDB id

9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 2, Structure Ib

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

9YQ0|1|9|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YQ0_108 not in the Motif Atlas

Homologous match to HL_9H3G_102

Geometric discrepancy: 0.0794

The information below is about HL_9H3G_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.4

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

9YQ0|1|9|G|1366
9YQ0|1|9|U|1367
9YQ0|1|9|U|1368
9YQ0|1|9|A|1369
9YQ0|1|9|A|1370
9YQ0|1|9|U|1371
9YQ0|1|9|U|1372
9YQ0|1|9|C|1373

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain RR

eS17