HL_9YQ1_062

3D structure

PDB id

9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 3, Structure Ic

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YQ1_062 not in the Motif Atlas

Homologous match to HL_8GLP_061

Geometric discrepancy: 0.0953

The information below is about HL_8GLP_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.3

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9YQ1|1|5|G|4250
9YQ1|1|5|A|4251
9YQ1|1|5|C|4252
9YQ1|1|5|A|4253
9YQ1|1|5|G|4254
9YQ1|1|5|A|4255
9YQ1|1|5|A|4256
9YQ1|1|5|A|4257
9YQ1|1|5|C|4258

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain J

Ribosomal protein L11