HL_9YQ1_091

3D structure

PDB id

9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 3, Structure Ic

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

9YQ1|1|9|C|450, 9YQ1|1|9|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YQ1|1|9|C|441
9YQ1|1|9|C|442
9YQ1|1|9|U|443
9YQ1|1|9|G|444
9YQ1|1|9|A|445
9YQ1|1|9|G|446
9YQ1|1|9|A|447
9YQ1|1|9|A|448
9YQ1|1|9|A|449
9YQ1|1|9|C|450
9YQ1|1|9|G|451
9YQ1|1|9|G|452

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4 (S4 X isoform)

Chain GG

40S ribosomal protein S6

Chain II

40S ribosomal protein S8

Chain YY

40S ribosomal protein S24