HL_9ZTL_002

3D structure

PDB id

9ZTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single Particle Cryo EM Analysis of a Ribosome Nascent Globin Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

C(4OC)UUCCAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9ZTL_002 not in the Motif Atlas

Homologous match to HL_9MTS_102

Geometric discrepancy: 0.1399

The information below is about HL_9MTS_102

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

44

Unit IDs

9ZTL|1|5|C|31
9ZTL|1|5|4OC|32
9ZTL|1|5|U|33
9ZTL|1|5|U|34
9ZTL|1|5|C|35
9ZTL|1|5|C|36
9ZTL|1|5|A|37
9ZTL|1|5|A|38
9ZTL|1|5|G|39

Current chains

Chain 5

P-site tRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain I

30S ribosomal protein S9

Chain X

mRNA