HL_9ZTL_003
3D structure
- PDB id
- 9ZTL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single Particle Cryo EM Analysis of a Ribosome Nascent Globin Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.91 Å
Loop
- Sequence
- G(5MU)(PSU)CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9ZTL_003 not in the Motif Atlas
- Homologous match to HL_8Z1P_002
- Geometric discrepancy: 0.154
- The information below is about HL_8Z1P_002
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.5
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 138
Unit IDs
9ZTL|1|5|G|52
9ZTL|1|5|5MU|53
9ZTL|1|5|PSU|54
9ZTL|1|5|C|55
9ZTL|1|5|G|56
9ZTL|1|5|A|57
9ZTL|1|5|U|58
9ZTL|1|5|U|59
9ZTL|1|5|C|60
Current chains
- Chain 5
- P-site tRNA
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- 50S ribosomal protein L5
- Chain l
- 50S ribosomal protein L16
Coloring options: