HL_9ZTL_044

3D structure

PDB id

9ZTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single Particle Cryo EM Analysis of a Ribosome Nascent Globin Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9ZTL|1|a|G|329, 9ZTL|1|a|A|330, 9ZTL|1|a|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9ZTL_044 not in the Motif Atlas

Homologous match to HL_7A0S_012

Geometric discrepancy: 0.2591

The information below is about HL_7A0S_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.5

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

9ZTL|1|a|G|327
9ZTL|1|a|U|328
9ZTL|1|a|G|329
9ZTL|1|a|A|330
9ZTL|1|a|C|331
9ZTL|1|a|A|332
9ZTL|1|a|G|333
9ZTL|1|a|C|334
9ZTL|1|a|C|335

Current chains

Chain a

23s rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

50S ribosomal protein L24