IL_10FZ_025

3D structure

PDB id

10FZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit from E. coli missing the gene encoding for the 16S rRNA 2'-O-methyltransferase RsmI

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

10FZ|1|A|U|531, 10FZ|1|A|A|532, 10FZ|1|A|U|534, 10FZ|1|A|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10FZ_025 not in the Motif Atlas

Homologous match to IL_6CZR_133

Geometric discrepancy: 0.4364

The information below is about IL_6CZR_133

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.3

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

10FZ|1|A|G|515
10FZ|1|A|U|516
10FZ|1|A|G|517
10FZ|1|A|C|518
10FZ|1|A|C|519
10FZ|1|A|A|520
10FZ|1|A|G|521
*
10FZ|1|A|C|528
10FZ|1|A|G|529
10FZ|1|A|G|530
10FZ|1|A|U|531
10FZ|1|A|A|532
10FZ|1|A|A|533
10FZ|1|A|U|534
10FZ|1|A|A|535
10FZ|1|A|C|536

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain L

Small ribosomal subunit protein uS12