IL_10PX_046
3D structure
- PDB id
- 10PX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.45 Å
Loop
- Sequence
- AUGAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_10PX_046 not in the Motif Atlas
- Homologous match to IL_7A0S_045
- Geometric discrepancy: 0.1013
- The information below is about IL_7A0S_045
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.4
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
10PX|1|1A|A|1262
10PX|1|1A|U|1263
10PX|1|1A|G|1264
10PX|1|1A|A|1265
10PX|1|1A|G|1266
10PX|1|1A|U|1267
10PX|1|1A|A|1268
10PX|1|1A|A|1269
*
10PX|1|1A|U|2011
10PX|1|1A|G|2012
10PX|1|1A|A|2013
10PX|1|1A|A|2014
10PX|1|1A|A|2015
10PX|1|1A|U|2016
10PX|1|1A|U|2017
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1F
- 50S ribosomal protein L4
- Chain 1W
- 50S ribosomal protein L22
Coloring options: