IL_10PX_253

3D structure

PDB id

10PX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

10PX|1|2A|A|2119

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10PX_253 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.4053

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

10PX|1|2A|G|2110
10PX|1|2A|C|2111
10PX|1|2A|G|2112
10PX|1|2A|U|2113
10PX|1|2A|A|2114
10PX|1|2A|G|2115
10PX|1|2A|G|2116
10PX|1|2A|A|2117
10PX|1|2A|U|2118
10PX|1|2A|A|2119
10PX|1|2A|G|2120
*
10PX|1|2A|C|2178
10PX|1|2A|C|2179

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA