Motif IL_32056.1 Version IL_32056.1 of this group appears in releases 3.89 to 3.95
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | break | 12 | 13 | 1-13 | 5-10 | 11-12 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U4M_002 | 3U4M | 0.1803 | 0 | B | LSU rRNA | G | 2110 | C | 2111 | G | 2112 | U | 2113 | A | 2114 | G | 2115 | G | 2116 | A | 2117 | U | 2118 | A | 2119 | G | 2120 | * | C | 2178 | C | 2179 | cWW | tWH | cWW |
| 2 | IL_5ML7_006 | 5ML7 | 0.0000 | 0 | B | 23S ribosomal RNA | G | 2151 | U | 2152 | G | 2153 | C | 2154 | A | 2155 | G | 2156 | C | 2157 | A | 2158 | U | 2159 | A | 2160 | G | 2161 | * | C | 2223 | C | 2224 | cWW | tWH | cWW |
| 3 | IL_1MZP_002 | 1MZP | 0.3436 | 0 | B | fragment of 23S rRNA | G | 6 | C | 7 | G | 8 | U | 9 | A | 10 | G | 11 | G | 12 | A | 13 | U | 14 | A | 15 | G | 16 | * | C | 49 | C | 50 | cWW | tWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCGUAGGAUAG*CC | 2 |
| GUGCAGCAUAG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGUAGGAUA* | 2 |
| UGCAGCAUA* | 1 |
Release history
| Release | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 |
|---|---|---|---|---|---|---|---|
| Date | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-L-cWW-L-L-tWH-R-L-R-L
- Heat map statistics
- Min 0.18 | Avg 0.20 | Max 0.37
Coloring options: