IL_10PX_269

3D structure

PDB id

10PX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

10PX|1|2A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10PX_269 not in the Motif Atlas

Homologous match to IL_7A0S_093

Geometric discrepancy: 0.0933

The information below is about IL_7A0S_093

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.4

Basepair signature

cWW-tSH-tHW-tHS-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

10PX|1|2A|U|2636
10PX|1|2A|U|2637
10PX|1|2A|G|2638
10PX|1|2A|A|2639
10PX|1|2A|G|2640
*
10PX|1|2A|C|2774
10PX|1|2A|A|2775
10PX|1|2A|A|2776
10PX|1|2A|G|2777
10PX|1|2A|A|2778
10PX|1|2A|U|2779
10PX|1|2A|G|2780
10PX|1|2A|A|2781
10PX|1|2A|G|2782

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13