IL_10PX_291

3D structure

PDB id

10PX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

10PX|1|2a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10PX_291 not in the Motif Atlas

Geometric match to IL_4LFB_009

Geometric discrepancy: 0.1045

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_00680.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

10PX|1|2a|G|148
10PX|1|2a|A|149
10PX|1|2a|C|150
10PX|1|2a|A|151
10PX|1|2a|A|152
10PX|1|2a|C|153
*
10PX|1|2a|G|168
10PX|1|2a|C|169
10PX|1|2a|U|170
10PX|1|2a|A|171
10PX|1|2a|A|172
10PX|1|2a|U|173
10PX|1|2a|C|174

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20