IL_10PX_299

3D structure

PDB id

10PX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

10PX|1|2a|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10PX_299 not in the Motif Atlas

Homologous match to IL_6CZR_359

Geometric discrepancy: 0.1796

The information below is about IL_6CZR_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.2

Basepair signature

cWW-tSH-tWH-cWH-tSS-tHW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

10PX|1|2a|G|409
10PX|1|2a|G|410
10PX|1|2a|A|411
10PX|1|2a|A|412
10PX|1|2a|G|413
10PX|1|2a|A|414
10PX|1|2a|A|415
10PX|1|2a|G|416
*
10PX|1|2a|U|427
10PX|1|2a|G|428
10PX|1|2a|U|429
10PX|1|2a|A|430
10PX|1|2a|A|431
10PX|1|2a|A|432
10PX|1|2a|C|433

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4