IL_10PX_315

3D structure

PDB id

10PX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10PX_315 not in the Motif Atlas

Homologous match to IL_6CZR_145

Geometric discrepancy: 0.1078

The information below is about IL_6CZR_145

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.6

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

10PX|1|2a|C|779
10PX|1|2a|A|780
10PX|1|2a|A|781
10PX|1|2a|A|782
10PX|1|2a|C|783
*
10PX|1|2a|G|799
10PX|1|2a|G|800
10PX|1|2a|U|801
10PX|1|2a|A|802
10PX|1|2a|G|803

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2D

50S ribosomal protein L2

Chain 2k

30S ribosomal protein S11