#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 101-102-93-84-75-6
1 IL_4V9F_0224V9F0.25700tSH-tHW-tHS0 LSU rRNAC719G720A721G722G723*C705G706C707A708G709cWWtSHtHWtHScWW
2 IL_4V9F_0554V9F0.23280tSH-tHW-tHS0 LSU rRNAU1639C1640A1641A1642C1643*G1542G1543U1544C1545G1546cWWtSHtHWtHScWW
3 IL_6CZR_1356CZR0.15980tSH-tHW-tHS1a SSU rRNAU741G742A743G744G745*U564G565U566A567G568cWWtSHtHWntHScWW
4 IL_4LFB_0234LFB0.15860tSH-tHW-tHSA SSU rRNAU757G758A759G760G761*U580G581U582A583G584cWWtSHtHWtHScWW
5 IL_5J7L_0275J7L0.18860tSH-tHW-tHSAA SSU rRNAU757C758A759G760G761*C580G581C582A583G584cWWtSHtHWtHScWW
6 IL_8CRE_4268CRE0.15140tSH-tHW-tHS (H)CM SSU rRNAU953C954A955A956G957*C625G626U627A628G629cWWtSHtHWtHScWW
7 IL_8P9A_4078P9A0.15820tSH-tHW-tHS (H)sR SSU rRNAU968C969A970A971G972*C627G628U629A630G631cWWtSHtHWtHScWW
8 IL_8P9A_4248P9A0.07840tSH-tHW-tHS (H)sR SSU rRNAC990G991A992A993G994*C1010G1011U1012A1013G1014cWWtSHtHWtHScWW
9 IL_8CRE_4388CRE0.00000tSH-tHW-tHS (H)CM SSU rRNAC975G976A977A978G979*C995G996U997A998G999cWWtSHtHWtHScWW
10 IL_5J7L_0375J7L0.08670tSH-tHW-tHSAA SSU rRNAC779A780A781A782C783*G799G800U801A802G803cWWtSHtHWtHScWW
11 IL_4LFB_0334LFB0.09430tSH-tHW-tHSA SSU rRNAC779A780A781A782C783*G799G800U801A802G803cWWtSHtHWtHScWW
12 IL_6CZR_1456CZR0.12930tSH-tHW-tHS1a SSU rRNAC763A764A765A766C767*G783G784U785A786G787cWWtSHtHWtHScWW
13 IL_4WF9_0524WF90.22000tSH-tHW-tHSX LSU rRNAU1394G1395A1396G1397G1398*C1407G1408U1409A1410G1411cWWntHWntHScWW
14 IL_5J7L_2935J7L0.22680tSH-tHW-tHSDA LSU rRNAC1357G1358A1359G1360G1361*C1370G1371U1372A1373G1374cWWtSHtHWtHScWW
15 IL_7A0S_0497A0S0.27430tSH-tHW-tHSX LSU rRNAU1370G1371A1372G1373G1374*C1383G1384C1385A1386G1387cWWtSHtHWtHScWW
16 IL_9DFE_0529DFE0.264801A LSU rRNAU1357G1358A1359A1360G1361*C1370G1371U1372A1373G1374cWWtSHntWWtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAAAC*GGUAG3
UGAGG*UGUAG2
UCAAG*CGUAG2
CGAAG*CGUAG2
CGAGG*CGCAG1
UCAAC*GGUCG1
UCAGG*CGCAG1
UGAGG*CGUAG1
CGAGG*CGUAG1
UGAGG*CGCAG1
UGAAG*CGUAG1
Non-Watson-Crick part of the motif
SequenceCounts
GAG*GUA4
GAA*GUA3
AAA*GUA3
GAG*GCA2
CAA*GUA2
CAA*GUC1
CAG*GCA1

Release history

Release3.95
Date2025-03-26
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • tSH-tHW-tHS (11)
  • tSH-tHW-tHS (H) (4)
  • (1)
  • Basepair signature
    cWW-tSH-tHW-tHS-cWW
    Heat map statistics
    Min 0.07 | Avg 0.21 | Max 0.38
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