IL_10QM_011
3D structure
- PDB id
- 10QM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli 50S ribosomal subunit bound to compound 48a
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 10QM|1|I|A|504, 10QM|1|I|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_10QM_011 not in the Motif Atlas
- Geometric match to IL_8B0X_075
- Geometric discrepancy: 0.0328
- The information below is about IL_8B0X_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44923.3
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 10
Unit IDs
10QM|1|I|G|481
10QM|1|I|A|482
10QM|1|I|A|483
10QM|1|I|C|484
*
10QM|1|I|G|496
10QM|1|I|A|497
10QM|1|I|G|498
10QM|1|I|U|499
10QM|1|I|G|500
10QM|1|I|A|501
10QM|1|I|A|502
10QM|1|I|A|503
10QM|1|I|A|504
10QM|1|I|A|505
10QM|1|I|G|506
10QM|1|I|A|507
10QM|1|I|A|508
10QM|1|I|C|509
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain a
- 50S ribosomal protein L22
- Chain c
- 50S ribosomal protein L24
Coloring options: