3D structure

PDB id
8B0X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translating 70S ribosome in the unrotated state (P and E, tRNAs)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.55 Å

Loop

Sequence
GAAC*GAGUGAAAAAGAAC
Length
18 nucleotides
Bulged bases
8B0X|1|a|A|504, 8B0X|1|a|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8B0X_075 not in the Motif Atlas
Homologous match to IL_5J7L_255
Geometric discrepancy: 0.0556
The information below is about IL_5J7L_255
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_81516.2
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
6

Unit IDs

8B0X|1|a|G|481
8B0X|1|a|A|482
8B0X|1|a|A|483
8B0X|1|a|C|484
*
8B0X|1|a|G|496
8B0X|1|a|A|497
8B0X|1|a|G|498
8B0X|1|a|U|499
8B0X|1|a|G|500
8B0X|1|a|A|501
8B0X|1|a|A|502
8B0X|1|a|A|503
8B0X|1|a|A|504
8B0X|1|a|A|505
8B0X|1|a|G|506
8B0X|1|a|A|507
8B0X|1|a|A|508
8B0X|1|a|C|509

Current chains

Chain a
23S rRNA

Nearby chains

Chain r
50S ribosomal protein L22
Chain t
50S ribosomal protein L24

Coloring options:


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